J4_4GKJ_002

3D structure

PDB id

4GKJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4GKJ_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0536

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4GKJ|1|A|G|136
4GKJ|1|A|A|137
4GKJ|1|A|G|138
*
4GKJ|1|A|C|172
4GKJ|1|A|A|173
4GKJ|1|A|U|174
4GKJ|1|A|G|175
4GKJ|1|A|U|176
4GKJ|1|A|G|177
*
4GKJ|1|A|C|200
4GKJ|1|A|A|201
4GKJ|1|A|A|202
4GKJ|1|A|A|203
4GKJ|1|A|G|204
*
4GKJ|1|A|C|214
4GKJ|1|A|G|215
4GKJ|1|A|C|216

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20