J4_4GKK_002

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4GKK_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0502

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4GKK|1|A|G|136
4GKK|1|A|A|137
4GKK|1|A|G|138
*
4GKK|1|A|C|172
4GKK|1|A|A|173
4GKK|1|A|U|174
4GKK|1|A|G|175
4GKK|1|A|U|176
4GKK|1|A|G|177
*
4GKK|1|A|C|200
4GKK|1|A|A|201
4GKK|1|A|A|202
4GKK|1|A|A|203
4GKK|1|A|G|204
*
4GKK|1|A|C|214
4GKK|1|A|G|215
4GKK|1|A|C|216

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20