J4_4GXY_001

3D structure

PDB id

4GXY (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA structure

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGAAG*CACG*CAC*GGAAACC

Length

20 nucleotides

Bulged bases

4GXY|1|A|A|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Cobalamin riboswitch

Broad Annotation

No text annotation

Motif group

J4_16596.1

Basepair signature

cWW-F-F-F-cWW-F-cWW-F-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

4GXY|1|A|G|40
4GXY|1|A|G|41
4GXY|1|A|G|42
4GXY|1|A|A|43
4GXY|1|A|A|44
4GXY|1|A|G|45
*
4GXY|1|A|C|61
4GXY|1|A|A|62
4GXY|1|A|C|63
4GXY|1|A|G|64
*
4GXY|1|A|C|72
4GXY|1|A|A|73
4GXY|1|A|C|74
*
4GXY|1|A|G|155
4GXY|1|A|G|156
4GXY|1|A|A|157
4GXY|1|A|A|158
4GXY|1|A|A|159
4GXY|1|A|C|160
4GXY|1|A|C|161

Current chains

Chain A

Adenosylcobalamin riboswitch

Nearby chains