J4_4IO9_008

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4IO9_008 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1241

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

4IO9|1|X|C|2264
4IO9|1|X|A|2265
4IO9|1|X|A|2266
4IO9|1|X|A|2267
4IO9|1|X|G|2268
*
4IO9|1|X|U|2322
4IO9|1|X|U|2323
4IO9|1|X|G|2324
4IO9|1|X|A|2325
4IO9|1|X|C|2326
*
4IO9|1|X|G|2349
4IO9|1|X|G|2350
4IO9|1|X|G|2351
*
4IO9|1|X|C|2360
4IO9|1|X|G|2361
4IO9|1|X|G|2362

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27