J4_4IOA_001

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|C|308
4IOA|1|X|G|309
4IOA|1|X|A|310
4IOA|1|X|A|311
4IOA|1|X|G|312
*
4IOA|1|X|C|327
4IOA|1|X|A|328
4IOA|1|X|C|329
4IOA|1|X|C|330
*
4IOA|1|X|G|334
4IOA|1|X|A|335
4IOA|1|X|A|336
*
4IOA|1|X|U|348
4IOA|1|X|G|349
4IOA|1|X|U|350
4IOA|1|X|A|351
4IOA|1|X|G|352

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24