Motif J4_71729.1 Version J4_71729.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-14 | 4-8 | 5-6 | 9-10 | 11-14 | 12-13 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4WF9_002 | 4WF9 | 0.0924 | 0 | X | LSU rRNA | C | 340 | G | 341 | A | 342 | A | 343 | U | 344 | * | A | 359 | A | 360 | U | 361 | C | 362 | * | G | 366 | A | 367 | A | 368 | * | U | 380 | G | 381 | U | 382 | A | 383 | G | 384 | cWW | cHH | ncSs | cWW | cWW | tHS | cWW | |
| 2 | J4_4Y4O_015 | 4Y4O | 0.0000 | 0 | 2A | LSU rRNA | C | 297 | G | 298 | A | 299 | A | 300 | G | 301 | * | C | 316 | G | 317 | C | 318 | C | 319 | * | G | 323 | A | 324 | G | 325 | * | C | 337 | G | 338 | U | 339 | A | 340 | G | 341 | cWW | tSH | cHH | cWW | cWW | tHS | cWW | |
| 3 | J4_4IOA_001 | 4IOA | 0.0848 | 0 | X | LSU rRNA | C | 308 | G | 309 | A | 310 | A | 311 | G | 312 | * | C | 327 | A | 328 | C | 329 | C | 330 | * | G | 334 | A | 335 | A | 336 | * | U | 348 | G | 349 | U | 350 | A | 351 | G | 352 | cWW | tSH | ncHH | ncSs | cWW | cWW | tHS | cWW |
| 4 | J4_5J7L_019 | 5J7L | 0.1005 | 0 | DA | LSU rRNA | G | 297 | G | 298 | A | 299 | A | 300 | G | 301 | * | C | 316 | G | 317 | C | 318 | G | 319 | * | C | 323 | A | 324 | G | 325 | * | C | 337 | G | 338 | U | 339 | A | 340 | C | 341 | cWW | tSH | cHH | cWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAU*AAUC*GAA*UGUAG | 1 |
| CGAAG*CGCC*GAG*CGUAG | 1 |
| CGAAG*CACC*GAA*UGUAG | 1 |
| GGAAG*CGCG*CAG*CGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*GC*A*GUA | 2 |
| GAA*AU*A*GUA | 1 |
| GAA*AC*A*GUA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.07 | Max 0.11
Coloring options: