Motif J4_71729.1 Version J4_71729.1 of this group appears in releases 3.2 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9	break		10		11		12	break		13		14		15		16		17	1-17	2-16	3-14	4-8	5-6	9-10	11-14	12-13
1	J4_4WF9_002	4WF9	0.0924	X	LSU rRNA	C	340	G	341	A	342	A	343	U	344	*	A	359	A	360	U	361	C	362	*	G	366	A	367	A	368	*	U	380	G	381	U	382	A	383	G	384	cWW		cHH	ncSs	cWW	cWW	tHS	cWW
2	J4_4Y4O_015	4Y4O	0.0000	2A	LSU rRNA	C	297	G	298	A	299	A	300	G	301	*	C	316	G	317	C	318	C	319	*	G	323	A	324	G	325	*	C	337	G	338	U	339	A	340	G	341	cWW	tSH	cHH		cWW	cWW	tHS	cWW
3	J4_4IOA_001	4IOA	0.0848	X	LSU rRNA	C	308	G	309	A	310	A	311	G	312	*	C	327	A	328	C	329	C	330	*	G	334	A	335	A	336	*	U	348	G	349	U	350	A	351	G	352	cWW	tSH	ncHH	ncSs	cWW	cWW	tHS	cWW
4	J4_5J7L_019	5J7L	0.1005	DA	LSU rRNA	G	297	G	298	A	299	A	300	G	301	*	C	316	G	317	C	318	G	319	*	C	323	A	324	G	325	*	C	337	G	338	U	339	A	340	C	341	cWW	tSH	cHH		cWW	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAUAAUCGAA*UGUAG	1
CGAAGCGCCGAG*CGUAG	1
CGAAGCACCGAA*UGUAG	1
GGAAGCGCGCAG*CGUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAGCA*GUA	2
GAAAUA*GUA	1
GAAACA*GUA	1

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Heat map statistics: Min 0.08 | Avg 0.07 | Max 0.11

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