J4_4IOA_005

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UC*GGAAAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

4IOA|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.1

Basepair signature

cWW-F-cWW-F-F-tWH-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4IOA|1|X|U|1326
4IOA|1|X|C|1327
*
4IOA|1|X|G|1351
4IOA|1|X|G|1352
4IOA|1|X|A|1353
4IOA|1|X|A|1354
4IOA|1|X|A|1355
4IOA|1|X|G|1356
*
4IOA|1|X|C|1417
4IOA|1|X|C|1418
*
4IOA|1|X|G|1613
4IOA|1|X|C|1614
4IOA|1|X|C|1615
4IOA|1|X|C|1616
4IOA|1|X|G|1617
4IOA|1|X|U|1618
4IOA|1|X|A|1619

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23