Motif J4_10313.1 Version J4_10313.1 of this group appears in releases 3.3 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5		6		7	break		8		9	break		10		11		12		13		14		15		16	1-16	2-3	6-15	7-8	9-10
1	J4_4IOA_005	4IOA	0.1610	1	X	LSU rRNA	U	1326	C	1327	*	G	1351	G	1352	A	1353	A	1355	G	1356	*	C	1417	C	1418	*	G	1613	C	1614	C	1615	C	1616	G	1617	U	1618	A	1619	cWW	cWW	tHW	cWW	cWW
2	J4_4WF9_006	4WF9	0.1234	1	X	LSU rRNA	U	1350	C	1351	*	G	1375	G	1376	U	1377	A	1379	G	1380	*	C	1441	C	1442	*	G	1641	C	1642	C	1643	C	1644	G	1645	U	1646	A	1647	cWW	cWW	tHW	cWW	cWW
3	J4_4Y4O_018	4Y4O	0.0000	1	2A	LSU rRNA	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	C	1598	C	1599	C	1600	G	1601	U	1602	A	1603	cWW	cWW	tHW	cWW	cWW
4	J4_4V9F_005	4V9F	0.1440	1	0	LSU rRNA	U	1419	C	1420	*	G	1444	G	1445	U	1446	A	1448	G	1449	*	C	1513	C	1514	*	G	1672	U	1673	C	1674	C	1675	G	1676	U	1677	A	1678	cWW	cWW	tHW	cWW	cWW
5	J4_5J7L_023	5J7L	0.1686	1	DA	LSU rRNA	U	1313	C	1314	*	G	1338	G	1339	U	1340	A	1342	G	1343	*	C	1404	U	1405	*	A	1597	A	1598	U	1599	C	1600	G	1601	U	1602	A	1603	cWW	cWW	tHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCGGAAAGCC*GCCCGUA	1
UCGGUUAGCC*GCCCGUA	1
UCGGUUAGCU*ACCCGUA	1
UCGGUUAGCC*GUCCGUA	1
UCGGUGAGCU*AAUCGUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUUA*CCCGU	2
GAAA*CCCGU	1
GUUA*UCCGU	1
GUGA*AUCGU	1

Release history

Release	3.2	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-02-09	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-cWW-F-F-tWH-F-F-F-cWW-cWW
Heat map statistics: Min 0.11 | Avg 0.14 | Max 0.26

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Coloring options: Nucleotide numbers

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