J4_4IOA_006

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

4IOA|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_50097.1

Basepair signature

cWW-tSH-F-tHS-F-F-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4IOA|1|X|A|1458
4IOA|1|X|U|1459
4IOA|1|X|G|1460
*
4IOA|1|X|U|1481
4IOA|1|X|U|1482
*
4IOA|1|X|G|1541
4IOA|1|X|G|1542
4IOA|1|X|G|1543
4IOA|1|X|A|1544
4IOA|1|X|G|1545
*
4IOA|1|X|C|1558
4IOA|1|X|G|1559
4IOA|1|X|A|1560
4IOA|1|X|A|1561
4IOA|1|X|G|1562
4IOA|1|X|U|1563

Current chains

Chain X

23S ribosomal RNA

Nearby chains