J4_4IOA_007

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.1

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|G|1763
4IOA|1|X|A|1764
4IOA|1|X|C|1765
4IOA|1|X|U|1766
4IOA|1|X|G|1767
*
4IOA|1|X|C|1779
4IOA|1|X|A|1780
4IOA|1|X|C|1781
4IOA|1|X|A|1782
4IOA|1|X|G|1783
*
4IOA|1|X|U|1819
4IOA|1|X|G|1820
4IOA|1|X|A|1821
4IOA|1|X|C|1822
*
4IOA|1|X|G|1958
4IOA|1|X|U|1959
4IOA|1|X|A|1960
4IOA|1|X|A|1961
4IOA|1|X|C|1962

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2