Motif J4_61477.1 Version J4_61477.1 of this group appears in releases 3.3 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-17 | 3-8 | 4-7 | 5-6 | 9-12 | 10-11 | 13-16 | 14-15 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_4WF9_007 | 4WF9 | 0.0677 | 0 | X | LSU rRNA | G | 1799 | A | 1800 | C | 1801 | U | 1802 | G | 1803 | * | C | 1815 | A | 1816 | C | 1817 | A | 1818 | G | 1819 | * | U | 1854 | G | 1855 | A | 1856 | C | 1857 | * | G | 2002 | U | 2003 | A | 2004 | A | 2005 | C | 2006 | cWW | tSW | tHS | cWW | tHS | ncWW | cWW | ||
| 2 | J4_5J7L_025 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 1772 | A | 1773 | C | 1774 | U | 1775 | G | 1776 | * | C | 1788 | A | 1789 | C | 1790 | A | 1791 | G | 1792 | * | U | 1827 | G | 1828 | A | 1829 | C | 1830 | * | G | 1975 | U | 1976 | A | 1977 | A | 1978 | U | 1979 | cWW | tSW | tHS | tHS | cWW | tHS | cWW | ntHS | cWW |
| 3 | J4_4Y4O_020 | 4Y4O | 0.0442 | 0 | 2A | LSU rRNA | G | 1772 | A | 1773 | C | 1774 | U | 1775 | G | 1776 | * | C | 1788 | A | 1789 | C | 1790 | A | 1791 | G | 1792 | * | C | 1827 | G | 1828 | A | 1829 | C | 1830 | * | G | 1975 | U | 1976 | A | 1977 | A | 1978 | C | 1979 | cWW | tSW | tHS | tHS | cWW | tHS | cWW | ntHS | cWW |
| 4 | J4_4IOA_007 | 4IOA | 0.0525 | 0 | X | LSU rRNA | G | 1763 | A | 1764 | C | 1765 | U | 1766 | G | 1767 | * | C | 1779 | A | 1780 | C | 1781 | A | 1782 | G | 1783 | * | U | 1819 | G | 1820 | A | 1821 | C | 1822 | * | G | 1958 | U | 1959 | A | 1960 | A | 1961 | C | 1962 | cWW | tSW | tHS | tHS | cWW | tHS | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUG*CACAG*UGAC*GUAAC | 2 |
| AACUG*CACAG*UGAC*GUAAU | 1 |
| GACUG*CACAG*CGAC*GUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACU*ACA*GA*UAA | 4 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Heat map statistics
- Min 0.04 | Avg 0.05 | Max 0.08
Coloring options: