#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5break 6 7 8 9 10break 11 12 13 14break 15 16 17 18 191-192-173-84-75-69-1210-1113-1614-15
1 J4_4WF9_0074WF90.06770X LSU rRNAG1799A1800C1801U1802G1803*C1815A1816C1817A1818G1819*U1854G1855A1856C1857*G2002U2003A2004A2005C2006cWWtSWtHScWWtHSncWWcWW
2 J4_5J7L_0255J7L0.00000DA LSU rRNAA1772A1773C1774U1775G1776*C1788A1789C1790A1791G1792*U1827G1828A1829C1830*G1975U1976A1977A1978U1979cWWtSWtHStHScWWtHScWWntHScWW
3 J4_4Y4O_0204Y4O0.044202A LSU rRNAG1772A1773C1774U1775G1776*C1788A1789C1790A1791G1792*C1827G1828A1829C1830*G1975U1976A1977A1978C1979cWWtSWtHStHScWWtHScWWntHScWW
4 J4_4IOA_0074IOA0.05250X LSU rRNAG1763A1764C1765U1766G1767*C1779A1780C1781A1782G1783*U1819G1820A1821C1822*G1958U1959A1960A1961C1962cWWtSWtHStHScWWtHScWWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUG*CACAG*UGAC*GUAAC2
AACUG*CACAG*UGAC*GUAAU1
GACUG*CACAG*CGAC*GUAAC1
Non-Watson-Crick part of the motif
SequenceCounts
ACU*ACA*GA*UAA4

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (4)
  • Basepair signature
    cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
    Heat map statistics
    Min 0.04 | Avg 0.05 | Max 0.08
    Help

    Coloring options:

    J4_4WF9_007:J4_4WF9_007 = 0J4_4WF9_007:J4_5J7L_025 = 0.0677J4_4WF9_007:J4_4Y4O_020 = 0.0748J4_4WF9_007:J4_4IOA_007 = 0.0815J4_5J7L_025:J4_4WF9_007 = 0.0677J4_5J7L_025:J4_5J7L_025 = 0J4_5J7L_025:J4_4Y4O_020 = 0.0442J4_5J7L_025:J4_4IOA_007 = 0.0525J4_4Y4O_020:J4_4WF9_007 = 0.0748J4_4Y4O_020:J4_5J7L_025 = 0.0442J4_4Y4O_020:J4_4Y4O_020 = 0J4_4Y4O_020:J4_4IOA_007 = 0.0574J4_4IOA_007:J4_4WF9_007 = 0.0815J4_4IOA_007:J4_5J7L_025 = 0.0525J4_4IOA_007:J4_4Y4O_020 = 0.0574J4_4IOA_007:J4_4IOA_007 = 0J4_4WF9_007J4_5J7L_025J4_4Y4O_020J4_4IOA_007Discrepancy0.000.020.040.060.08
    Copyright 2025 BGSU RNA group. Page generated in 1.5593 s
    Application loaded.