J4_4IOA_008

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4IOA|1|X|A|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.1

Basepair signature

cWW-tWW-cHW-F-F-cWW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|C|2264
4IOA|1|X|A|2265
4IOA|1|X|A|2266
4IOA|1|X|A|2267
4IOA|1|X|G|2268
*
4IOA|1|X|U|2322
4IOA|1|X|U|2323
4IOA|1|X|G|2324
4IOA|1|X|A|2325
4IOA|1|X|C|2326
*
4IOA|1|X|G|2349
4IOA|1|X|G|2350
4IOA|1|X|G|2351
*
4IOA|1|X|C|2360
4IOA|1|X|G|2361
4IOA|1|X|G|2362

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27