#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 8 9break 10 11 12break 13 14 151-153-63-84-57-119-1012-13
1 J4_5TBW_0085TBW0.264111 LSU rRNAC2654U2655A2656G2658*U2712U2713G2714A2715U2716*A2740C2741C2742*G2751U2752G2753cWWtWWntHHcWWncHWcWWcWW
2 J4_4V9F_0094V9F0.267410 LSU rRNAC2319U2320A2321G2323*U2377U2378G2379A2380C2381*G2407A2408C2409*G2418U2419G2420cWWtWWtHHcWWcHWcWWcWW
3 J4_4WF9_0084WF90.17741X LSU rRNAC2312A2313A2314G2316*U2370U2371G2372A2373C2374*G2397G2398G2399*C2408G2409G2410cWWcWWcWWcWW
4 J4_4IOA_0084IOA0.12551X LSU rRNAC2264A2265A2266G2268*U2322U2323G2324A2325C2326*G2349G2350G2351*C2360G2361G2362cWWcWWcHWcWWcWW
5 J4_4Y4O_0224Y4O0.000012A LSU rRNAC2285A2286A2287G2289*C2343U2344G2345A2346C2347*G2370G2371G2372*C2381G2382G2383cWWtWWntHHcWWcHWcWWcWW
6 J4_5J7L_0275J7L0.14061DA LSU rRNAC2285G2286A2287G2289*U2343U2344G2345A2346C2347*G2370G2371U2372*A2381G2382G2383cWWtWWntHHcWWcHWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAAAG*UUGAC*GGG*CGG2
CUAAG*UUGAU*ACC*GUG1
CUAUG*UUGAC*GAC*GUG1
CAAAG*CUGAC*GGG*CGG1
CGAAG*UUGAC*GGU*AGG1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*UGA*G*G3
UAA*UGA*C*U1
UAU*UGA*A*U1
GAA*UGA*G*G1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.47
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-21
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Basepair signature
    cWW-tWW-cHW-F-F-cWW-cWW-F-cWW
    Heat map statistics
    Min 0.13 | Avg 0.18 | Max 0.28
    Help

    Coloring options:

    J4_5TBW_008:J4_5TBW_008 = 0J4_5TBW_008:J4_4V9F_009 = 0.2283J4_5TBW_008:J4_4WF9_008 = 0.2502J4_5TBW_008:J4_4IOA_008 = 0.2743J4_5TBW_008:J4_4Y4O_022 = 0.2641J4_5TBW_008:J4_5J7L_027 = 0.2683J4_4V9F_009:J4_5TBW_008 = 0.2283J4_4V9F_009:J4_4V9F_009 = 0J4_4V9F_009:J4_4WF9_008 = 0.2471J4_4V9F_009:J4_4IOA_008 = 0.2751J4_4V9F_009:J4_4Y4O_022 = 0.2674J4_4V9F_009:J4_5J7L_027 = 0.2837J4_4WF9_008:J4_5TBW_008 = 0.2502J4_4WF9_008:J4_4V9F_009 = 0.2471J4_4WF9_008:J4_4WF9_008 = 0J4_4WF9_008:J4_4IOA_008 = 0.1488J4_4WF9_008:J4_4Y4O_022 = 0.1774J4_4WF9_008:J4_5J7L_027 = 0.174J4_4IOA_008:J4_5TBW_008 = 0.2743J4_4IOA_008:J4_4V9F_009 = 0.2751J4_4IOA_008:J4_4WF9_008 = 0.1488J4_4IOA_008:J4_4IOA_008 = 0J4_4IOA_008:J4_4Y4O_022 = 0.1255J4_4IOA_008:J4_5J7L_027 = 0.1689J4_4Y4O_022:J4_5TBW_008 = 0.2641J4_4Y4O_022:J4_4V9F_009 = 0.2674J4_4Y4O_022:J4_4WF9_008 = 0.1774J4_4Y4O_022:J4_4IOA_008 = 0.1255J4_4Y4O_022:J4_4Y4O_022 = 0J4_4Y4O_022:J4_5J7L_027 = 0.1406J4_5J7L_027:J4_5TBW_008 = 0.2683J4_5J7L_027:J4_4V9F_009 = 0.2837J4_5J7L_027:J4_4WF9_008 = 0.174J4_5J7L_027:J4_4IOA_008 = 0.1689J4_5J7L_027:J4_4Y4O_022 = 0.1406J4_5J7L_027:J4_5J7L_027 = 0J4_5TBW_008J4_4V9F_009J4_4WF9_008J4_4IOA_008J4_4Y4O_022J4_5J7L_027Discrepancy0.000.050.100.150.200.25
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