J4_4JI2_002

3D structure

PDB id

4JI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4JI2_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.092

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4JI2|1|A|G|142
4JI2|1|A|A|143
4JI2|1|A|G|144
*
4JI2|1|A|C|178
4JI2|1|A|A|179
4JI2|1|A|U|180
4JI2|1|A|G|181
4JI2|1|A|U|182
4JI2|1|A|G|183
*
4JI2|1|A|C|194
4JI2|1|A|A|195
4JI2|1|A|A|196
4JI2|1|A|A|197
4JI2|1|A|G|198
*
4JI2|1|A|C|219
4JI2|1|A|G|220
4JI2|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20