J4_4JI4_002

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4JI4_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0954

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4JI4|1|A|G|142
4JI4|1|A|A|143
4JI4|1|A|G|144
*
4JI4|1|A|C|178
4JI4|1|A|A|179
4JI4|1|A|U|180
4JI4|1|A|G|181
4JI4|1|A|U|182
4JI4|1|A|G|183
*
4JI4|1|A|C|194
4JI4|1|A|A|195
4JI4|1|A|A|196
4JI4|1|A|A|197
4JI4|1|A|G|198
*
4JI4|1|A|C|219
4JI4|1|A|G|220
4JI4|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

RIBOSOMAL PROTEIN S20