J4_4JV5_002

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4JV5_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.059

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4JV5|1|A|G|142
4JV5|1|A|A|143
4JV5|1|A|G|144
*
4JV5|1|A|C|178
4JV5|1|A|A|179
4JV5|1|A|U|180
4JV5|1|A|G|181
4JV5|1|A|U|182
4JV5|1|A|G|183
*
4JV5|1|A|C|194
4JV5|1|A|A|195
4JV5|1|A|A|196
4JV5|1|A|A|197
4JV5|1|A|G|198
*
4JV5|1|A|C|219
4JV5|1|A|G|220
4JV5|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein 20