J4_4KHP_002

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4KHP_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0567

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4KHP|1|A|G|137
4KHP|1|A|A|138
4KHP|1|A|G|139
*
4KHP|1|A|C|173
4KHP|1|A|A|174
4KHP|1|A|U|175
4KHP|1|A|G|176
4KHP|1|A|U|177
4KHP|1|A|G|178
*
4KHP|1|A|C|201
4KHP|1|A|A|202
4KHP|1|A|A|203
4KHP|1|A|A|204
4KHP|1|A|G|205
*
4KHP|1|A|C|215
4KHP|1|A|G|216
4KHP|1|A|C|217

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain T

30S Ribosomal protein S20