J4_4KVB_002

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4KVB|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4KVB_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1078

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4KVB|1|A|G|142
4KVB|1|A|A|143
4KVB|1|A|G|144
*
4KVB|1|A|C|178
4KVB|1|A|A|179
4KVB|1|A|U|180
4KVB|1|A|G|181
4KVB|1|A|U|182
4KVB|1|A|G|183
*
4KVB|1|A|C|194
4KVB|1|A|A|195
4KVB|1|A|A|196
4KVB|1|A|A|197
4KVB|1|A|G|198
*
4KVB|1|A|C|219
4KVB|1|A|G|220
4KVB|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20