J4_4KZZ_002
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4KZZ|1|i|A|662, 4KZZ|1|i|A|1079
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4KZZ_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1138
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4KZZ|1|i|A|661
4KZZ|1|i|A|662
4KZZ|1|i|G|663
*
4KZZ|1|i|C|1028
4KZZ|1|i|G|1029
4KZZ|1|i|A|1030
4KZZ|1|i|A|1031
4KZZ|1|i|A|1032
4KZZ|1|i|G|1033
*
4KZZ|1|i|C|1074
4KZZ|1|i|C|1075
4KZZ|1|i|A|1076
4KZZ|1|i|U|1077
4KZZ|1|i|A|1078
4KZZ|1|i|A|1079
4KZZ|1|i|A|1080
4KZZ|1|i|C|1081
4KZZ|1|i|G|1082
4KZZ|1|i|A|1083
4KZZ|1|i|U|1084
4KZZ|1|i|G|1085
*
4KZZ|1|i|U|1156
4KZZ|1|i|U|1157
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain L
- 40S Ribosomal Protein S11
- Chain N
- 40S Ribosomal Protein S13
- Chain O
- 40S Ribosomal Protein S14
- Chain W
- 40S Ribosomal Protein S15A
- Chain X
- 40S Ribosomal Protein S23
- Chain a
- 40S Ribosomal Protein S26
Coloring options: