J4_4L71_013

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L71_013 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1809

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4L71|1|RA|C|2285
4L71|1|RA|A|2286
4L71|1|RA|A|2287
4L71|1|RA|A|2288
4L71|1|RA|G|2289
*
4L71|1|RA|C|2343
4L71|1|RA|U|2344
4L71|1|RA|G|2345
4L71|1|RA|A|2346
4L71|1|RA|C|2347
*
4L71|1|RA|G|2370
4L71|1|RA|G|2371
4L71|1|RA|G|2372
*
4L71|1|RA|C|2381
4L71|1|RA|G|2382
4L71|1|RA|G|2383

Current chains

Chain RA

23S Ribosomal RNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R6

50S ribosomal protein L33

Chain R8

50S ribosomal protein L35

Chain RS

50S ribosomal protein L18