J4_4L71_016

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4L71|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4L71_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1464

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4L71|1|XA|G|142
4L71|1|XA|A|143
4L71|1|XA|G|144
*
4L71|1|XA|C|178
4L71|1|XA|A|179
4L71|1|XA|U|180
4L71|1|XA|G|181
4L71|1|XA|U|182
4L71|1|XA|G|183
*
4L71|1|XA|C|194
4L71|1|XA|A|195
4L71|1|XA|A|196
4L71|1|XA|A|197
4L71|1|XA|G|198
*
4L71|1|XA|C|219
4L71|1|XA|G|220
4L71|1|XA|C|221

Current chains

Chain XA

16S Ribosomal RNA

Nearby chains

Chain XT

30S ribosomal protein S20