J4_4LF5_002

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4LF5|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LF5_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0765

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4LF5|1|A|G|142
4LF5|1|A|A|143
4LF5|1|A|G|144
*
4LF5|1|A|C|178
4LF5|1|A|A|179
4LF5|1|A|U|180
4LF5|1|A|G|181
4LF5|1|A|U|182
4LF5|1|A|G|183
*
4LF5|1|A|C|194
4LF5|1|A|A|195
4LF5|1|A|A|196
4LF5|1|A|A|197
4LF5|1|A|G|198
*
4LF5|1|A|C|219
4LF5|1|A|G|220
4LF5|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20