J4_4LFC_002

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LFC_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0587

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4LFC|1|A|G|142
4LFC|1|A|A|143
4LFC|1|A|G|144
*
4LFC|1|A|C|178
4LFC|1|A|A|179
4LFC|1|A|U|180
4LFC|1|A|G|181
4LFC|1|A|U|182
4LFC|1|A|G|183
*
4LFC|1|A|C|194
4LFC|1|A|A|195
4LFC|1|A|A|196
4LFC|1|A|A|197
4LFC|1|A|G|198
*
4LFC|1|A|C|219
4LFC|1|A|G|220
4LFC|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20