J4_4LFZ_002

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LFZ_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1289

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4LFZ|1|QA|G|142
4LFZ|1|QA|A|143
4LFZ|1|QA|G|144
*
4LFZ|1|QA|C|178
4LFZ|1|QA|A|179
4LFZ|1|QA|U|180
4LFZ|1|QA|G|181
4LFZ|1|QA|U|182
4LFZ|1|QA|G|183
*
4LFZ|1|QA|C|194
4LFZ|1|QA|A|195
4LFZ|1|QA|A|196
4LFZ|1|QA|A|197
4LFZ|1|QA|G|198
*
4LFZ|1|QA|C|219
4LFZ|1|QA|G|220
4LFZ|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20