J4_4LNT_011

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LNT_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0507

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4LNT|1|RA|G|1772
4LNT|1|RA|A|1773
4LNT|1|RA|C|1774
4LNT|1|RA|U|1775
4LNT|1|RA|G|1776
*
4LNT|1|RA|C|1788
4LNT|1|RA|A|1789
4LNT|1|RA|C|1790
4LNT|1|RA|A|1791
4LNT|1|RA|G|1792
*
4LNT|1|RA|C|1827
4LNT|1|RA|G|1828
4LNT|1|RA|A|1829
4LNT|1|RA|C|1830
*
4LNT|1|RA|G|1975
4LNT|1|RA|U|1976
4LNT|1|RA|A|1977
4LNT|1|RA|A|1978
4LNT|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2