3D structure

PDB id
4LNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.94 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
4LNT|1|RA|A|2288, 4LNT|1|RA|G|2382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4LNT_013 not in the Motif Atlas
Homologous match to J4_4WF9_008
Geometric discrepancy: 0.1722
The information below is about J4_4WF9_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

4LNT|1|RA|C|2285
4LNT|1|RA|A|2286
4LNT|1|RA|A|2287
4LNT|1|RA|A|2288
4LNT|1|RA|G|2289
*
4LNT|1|RA|C|2343
4LNT|1|RA|U|2344
4LNT|1|RA|G|2345
4LNT|1|RA|A|2346
4LNT|1|RA|C|2347
*
4LNT|1|RA|G|2370
4LNT|1|RA|G|2371
4LNT|1|RA|G|2372
*
4LNT|1|RA|C|2381
4LNT|1|RA|G|2382
4LNT|1|RA|G|2383

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R6
50S ribosomal protein L33
Chain R8
50S ribosomal protein L35
Chain RS
50S ribosomal protein L18

Coloring options:


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