J4_4LNT_016

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4LNT|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LNT_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1403

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_36568.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-tWH-tWH-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4LNT|1|XA|G|142
4LNT|1|XA|A|143
4LNT|1|XA|G|144
*
4LNT|1|XA|C|178
4LNT|1|XA|A|179
4LNT|1|XA|U|180
4LNT|1|XA|G|181
4LNT|1|XA|U|182
4LNT|1|XA|G|183
*
4LNT|1|XA|C|194
4LNT|1|XA|A|195
4LNT|1|XA|A|196
4LNT|1|XA|A|197
4LNT|1|XA|G|198
*
4LNT|1|XA|C|219
4LNT|1|XA|G|220
4LNT|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20