J4_4LSK_016

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4LSK|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LSK_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1364

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4LSK|1|XA|G|142
4LSK|1|XA|A|143
4LSK|1|XA|G|144
*
4LSK|1|XA|C|178
4LSK|1|XA|A|179
4LSK|1|XA|U|180
4LSK|1|XA|G|181
4LSK|1|XA|U|182
4LSK|1|XA|G|183
*
4LSK|1|XA|C|194
4LSK|1|XA|A|195
4LSK|1|XA|A|196
4LSK|1|XA|A|197
4LSK|1|XA|G|198
*
4LSK|1|XA|C|219
4LSK|1|XA|G|220
4LSK|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20