J4_4LSK_019

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4LSK|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4LSK_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0833

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4LSK|1|YA|C|268
4LSK|1|YA|U|269
*
4LSK|1|YA|G|370
4LSK|1|YA|A|371
4LSK|1|YA|G|372
4LSK|1|YA|U|373
4LSK|1|YA|A|374
4LSK|1|YA|C|375
*
4LSK|1|YA|G|399
4LSK|1|YA|G|400
4LSK|1|YA|A|401
4LSK|1|YA|A|402
4LSK|1|YA|U|403
4LSK|1|YA|C|404
4LSK|1|YA|U|405
4LSK|1|YA|G|406
*
4LSK|1|YA|U|421
4LSK|1|YA|A|422
4LSK|1|YA|A|423
4LSK|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9