J4_4NXM_002

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4NXM_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0844

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4NXM|1|A|G|142
4NXM|1|A|A|143
4NXM|1|A|G|144
*
4NXM|1|A|C|178
4NXM|1|A|A|179
4NXM|1|A|U|180
4NXM|1|A|G|181
4NXM|1|A|U|182
4NXM|1|A|G|183
*
4NXM|1|A|C|194
4NXM|1|A|A|195
4NXM|1|A|A|196
4NXM|1|A|A|197
4NXM|1|A|G|198
*
4NXM|1|A|C|219
4NXM|1|A|G|220
4NXM|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20