J4_4NXN_002

3D structure

PDB id

4NXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4NXN|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4NXN_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0872

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4NXN|1|A|G|142
4NXN|1|A|A|143
4NXN|1|A|G|144
*
4NXN|1|A|C|178
4NXN|1|A|A|179
4NXN|1|A|U|180
4NXN|1|A|G|181
4NXN|1|A|U|182
4NXN|1|A|G|183
*
4NXN|1|A|C|194
4NXN|1|A|A|195
4NXN|1|A|A|196
4NXN|1|A|A|197
4NXN|1|A|G|198
*
4NXN|1|A|C|219
4NXN|1|A|G|220
4NXN|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

ribosomal protein S20