J4_4P6F_002

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4P6F|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4P6F_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1154

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4P6F|1|QA|G|142
4P6F|1|QA|A|143
4P6F|1|QA|G|144
*
4P6F|1|QA|C|178
4P6F|1|QA|A|179
4P6F|1|QA|U|180
4P6F|1|QA|G|181
4P6F|1|QA|U|182
4P6F|1|QA|G|183
*
4P6F|1|QA|C|194
4P6F|1|QA|A|195
4P6F|1|QA|A|196
4P6F|1|QA|A|197
4P6F|1|QA|G|198
*
4P6F|1|QA|C|219
4P6F|1|QA|G|220
4P6F|1|QA|C|221

Current chains

Chain QA

16S ribosomal RNA

Nearby chains

Chain QT

30S ribosomal protein S20