3D structure

PDB id
4P70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
CAAAG*CUGAC*GGG*CGG
Length
16 nucleotides
Bulged bases
4P70|1|RA|A|2288
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4P70_013 not in the Motif Atlas
Homologous match to J4_4WF9_008
Geometric discrepancy: 0.1694
The information below is about J4_4WF9_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

4P70|1|RA|C|2285
4P70|1|RA|A|2286
4P70|1|RA|A|2287
4P70|1|RA|A|2288
4P70|1|RA|G|2289
*
4P70|1|RA|C|2343
4P70|1|RA|U|2344
4P70|1|RA|G|2345
4P70|1|RA|A|2346
4P70|1|RA|C|2347
*
4P70|1|RA|G|2370
4P70|1|RA|G|2371
4P70|1|RA|G|2372
*
4P70|1|RA|C|2381
4P70|1|RA|G|2382
4P70|1|RA|G|2383

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R6
50S ribosomal protein L33
Chain R8
50S ribosomal protein L35
Chain RS
50S ribosomal protein L18

Coloring options:


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