J4_4TUB_001

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4TUB|1|QA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0784

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4TUB|1|QA|G|115
4TUB|1|QA|A|116
4TUB|1|QA|G|117
4TUB|1|QA|U|118
4TUB|1|QA|A|119
4TUB|1|QA|A|120
4TUB|1|QA|C|121
4TUB|1|QA|G|122
*
4TUB|1|QA|U|239
4TUB|1|QA|C|240
*
4TUB|1|QA|G|286
4TUB|1|QA|U|287
4TUB|1|QA|A|288
4TUB|1|QA|G|289
*
4TUB|1|QA|C|311
4TUB|1|QA|C|312

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain QQ

30S ribosomal protein S17