J4_4TUB_005

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4TUB|1|RA|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0798

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4TUB|1|RA|C|257
4TUB|1|RA|U|258
*
4TUB|1|RA|G|397
4TUB|1|RA|A|398
4TUB|1|RA|G|399
4TUB|1|RA|U|400
4TUB|1|RA|A|401
4TUB|1|RA|C|402
*
4TUB|1|RA|G|426
4TUB|1|RA|G|427
4TUB|1|RA|A|428
4TUB|1|RA|A|429
4TUB|1|RA|U|430
4TUB|1|RA|C|431
4TUB|1|RA|U|432
4TUB|1|RA|G|433
*
4TUB|1|RA|U|448
4TUB|1|RA|A|449
4TUB|1|RA|A|450
4TUB|1|RA|G|451

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9