J4_4TUB_007
3D structure
- PDB id
- 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 4TUB|1|RA|G|1317, 4TUB|1|RA|A|1318, 4TUB|1|RA|U|1319, 4TUB|1|RA|G|1694
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4TUB_007 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0788
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4TUB|1|RA|C|1316
4TUB|1|RA|G|1317
4TUB|1|RA|A|1318
4TUB|1|RA|U|1319
4TUB|1|RA|A|1320
4TUB|1|RA|A|1321
4TUB|1|RA|A|1322
*
4TUB|1|RA|U|1340
4TUB|1|RA|C|1341
*
4TUB|1|RA|G|1692
4TUB|1|RA|C|1693
4TUB|1|RA|G|1694
4TUB|1|RA|C|1695
*
4TUB|1|RA|G|2031
4TUB|1|RA|G|2032
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RR
- 50S ribosomal protein L17
- Chain RW
- 50S ribosomal protein L22
Coloring options: