J4_4TUB_008

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4TUB|1|RA|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.093

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4TUB|1|RA|G|1356
4TUB|1|RA|G|1357
4TUB|1|RA|U|1358
4TUB|1|RA|U|1359
4TUB|1|RA|C|1360
*
4TUB|1|RA|G|1384
4TUB|1|RA|G|1385
4TUB|1|RA|U|1386
4TUB|1|RA|U|1387
4TUB|1|RA|A|1388
4TUB|1|RA|G|1389
*
4TUB|1|RA|C|1450
4TUB|1|RA|U|1451
*
4TUB|1|RA|A|1643
4TUB|1|RA|C|1644
4TUB|1|RA|C|1645
4TUB|1|RA|C|1646
4TUB|1|RA|G|1647
4TUB|1|RA|U|1648
4TUB|1|RA|A|1649
4TUB|1|RA|C|1650

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23