J4_4TUB_019

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4TUB|1|YA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUB_019 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0884

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4TUB|1|YA|C|268
4TUB|1|YA|U|269
*
4TUB|1|YA|G|370
4TUB|1|YA|A|371
4TUB|1|YA|G|372
4TUB|1|YA|U|373
4TUB|1|YA|A|374
4TUB|1|YA|C|375
*
4TUB|1|YA|G|399
4TUB|1|YA|G|400
4TUB|1|YA|A|401
4TUB|1|YA|A|402
4TUB|1|YA|U|403
4TUB|1|YA|C|404
4TUB|1|YA|U|405
4TUB|1|YA|G|406
*
4TUB|1|YA|U|421
4TUB|1|YA|A|422
4TUB|1|YA|A|423
4TUB|1|YA|G|424

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YI

50S ribosomal protein L9