J4_4TUD_016

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4TUD|1|XA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUD_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1351

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4TUD|1|XA|G|142
4TUD|1|XA|A|143
4TUD|1|XA|G|144
*
4TUD|1|XA|C|178
4TUD|1|XA|A|179
4TUD|1|XA|U|180
4TUD|1|XA|G|181
4TUD|1|XA|U|182
4TUD|1|XA|G|183
*
4TUD|1|XA|C|194
4TUD|1|XA|A|195
4TUD|1|XA|A|196
4TUD|1|XA|A|197
4TUD|1|XA|G|198
*
4TUD|1|XA|C|219
4TUD|1|XA|G|220
4TUD|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20