J4_4TUE_002

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4TUE|1|QA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUE_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0969

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4TUE|1|QA|G|142
4TUE|1|QA|A|143
4TUE|1|QA|G|144
*
4TUE|1|QA|C|178
4TUE|1|QA|A|179
4TUE|1|QA|U|180
4TUE|1|QA|G|181
4TUE|1|QA|U|182
4TUE|1|QA|G|183
*
4TUE|1|QA|C|194
4TUE|1|QA|A|195
4TUE|1|QA|A|196
4TUE|1|QA|A|197
4TUE|1|QA|G|198
*
4TUE|1|QA|C|219
4TUE|1|QA|G|220
4TUE|1|QA|C|221

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20