J4_4U25_013
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 4U25|1|BA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U25_013 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.101
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U25|1|BA|C|2285
4U25|1|BA|G|2286
4U25|1|BA|A|2287
4U25|1|BA|A|2288
4U25|1|BA|G|2289
*
4U25|1|BA|U|2343
4U25|1|BA|U|2344
4U25|1|BA|G|2345
4U25|1|BA|A|2346
4U25|1|BA|C|2347
*
4U25|1|BA|G|2370
4U25|1|BA|G|2371
4U25|1|BA|U|2372
*
4U25|1|BA|A|2381
4U25|1|BA|G|2382
4U25|1|BA|G|2383
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BO
- 50S ribosomal protein L18
- Chain BW
- 50S ribosomal protein L27
Coloring options: