3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
4U50|1|2|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U50_010 not in the Motif Atlas
Homologous match to J4_8P9A_021
Geometric discrepancy: 0.0704
The information below is about J4_8P9A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

4U50|1|2|C|99
4U50|1|2|A|100
4U50|1|2|U|101
4U50|1|2|U|102
4U50|1|2|A|103
4U50|1|2|A|104
4U50|1|2|A|105
4U50|1|2|U|106
4U50|1|2|C|107
*
4U50|1|2|G|307
4U50|1|2|C|308
4U50|1|2|C|309
*
4U50|1|2|G|357
4U50|1|2|U|358
4U50|1|2|A|359
4U50|1|2|A|360
4U50|1|2|C|361
*
4U50|1|2|G|383
4U50|1|2|G|384

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C1
40S ribosomal protein S11-A
Chain D3
40S ribosomal protein S23-A
Chain S4
40S ribosomal protein S4-A
Chain S8
40S ribosomal protein S8-A

Coloring options:


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