J4_4UG0_004

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

4UG0|1|L5|A|2366, 4UG0|1|L5|U|2369, 4UG0|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|C|2365
4UG0|1|L5|A|2366
4UG0|1|L5|A|2367
4UG0|1|L5|A|2368
4UG0|1|L5|U|2369
4UG0|1|L5|A|2370
4UG0|1|L5|U|2371
*
4UG0|1|L5|A|2389
4UG0|1|L5|G|2390
4UG0|1|L5|G|2391
*
4UG0|1|L5|C|2824
4UG0|1|L5|A|2825
4UG0|1|L5|U|2826
4UG0|1|L5|G|2827
4UG0|1|L5|U|2828
4UG0|1|L5|U|2829
*
4UG0|1|L5|A|3856
4UG0|1|L5|G|3857

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S RIBOSOMAL PROTEIN L17

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain Ld

60S RIBOSOMAL PROTEIN L31