J4_4UG0_015
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4UG0|1|S2|A|672, 4UG0|1|S2|A|1083, 4UG0|1|S2|G|1086, 4UG0|1|S2|U|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UG0_015 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1104
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4UG0|1|S2|A|671
4UG0|1|S2|A|672
4UG0|1|S2|G|673
*
4UG0|1|S2|C|1032
4UG0|1|S2|G|1033
4UG0|1|S2|A|1034
4UG0|1|S2|A|1035
4UG0|1|S2|A|1036
4UG0|1|S2|G|1037
*
4UG0|1|S2|C|1078
4UG0|1|S2|C|1079
4UG0|1|S2|A|1080
4UG0|1|S2|U|1081
4UG0|1|S2|A|1082
4UG0|1|S2|A|1083
4UG0|1|S2|A|1084
4UG0|1|S2|C|1085
4UG0|1|S2|G|1086
4UG0|1|S2|A|1087
4UG0|1|S2|U|1088
4UG0|1|S2|G|1089
*
4UG0|1|S2|U|1160
4UG0|1|S2|U|1161
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Ln
- 60S RIBOSOMAL PROTEIN L41
- Chain Lp
- 60S RIBOSOMAL PROTEIN L37A
- Chain SL
- 40S RIBOSOMAL PROTEIN S11
- Chain SN
- 40S RIBOSOMAL PROTEIN S13
- Chain SO
- 40S RIBOSOMAL PROTEIN S14
- Chain SW
- 40S RIBOSOMAL PROTEIN S15A
- Chain SX
- 40S RIBOSOMAL PROTEIN S23
- Chain Sa
- 40S RIBOSOMAL PROTEIN S26
Coloring options: