J4_4UJC_002

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

4UJC|1|A2|A|2343, 4UJC|1|A2|U|2346, 4UJC|1|A2|A|2347, 4UJC|1|A2|U|2803, 4UJC|1|A2|U|2805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|2342
4UJC|1|A2|A|2343
4UJC|1|A2|A|2344
4UJC|1|A2|A|2345
4UJC|1|A2|U|2346
4UJC|1|A2|A|2347
4UJC|1|A2|U|2348
*
4UJC|1|A2|A|2366
4UJC|1|A2|G|2367
4UJC|1|A2|G|2368
*
4UJC|1|A2|C|2801
4UJC|1|A2|A|2802
4UJC|1|A2|U|2803
4UJC|1|A2|G|2804
4UJC|1|A2|U|2805
4UJC|1|A2|U|2806
*
4UJC|1|A2|A|3825
4UJC|1|A2|G|3826

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain Bd

60S RIBOSOMAL PROTEIN L31