J4_4UJE_006
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJE_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1291
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4UJE|1|A2|G|3603
4UJE|1|A2|A|3604
4UJE|1|A2|C|3605
4UJE|1|A2|U|3606
4UJE|1|A2|G|3607
*
4UJE|1|A2|C|3619
4UJE|1|A2|A|3620
4UJE|1|A2|A|3621
4UJE|1|A2|A|3622
4UJE|1|A2|G|3623
*
4UJE|1|A2|U|3659
4UJE|1|A2|G|3660
4UJE|1|A2|A|3661
4UJE|1|A2|U|3662
4UJE|1|A2|U|3663
*
4UJE|1|A2|A|3790
4UJE|1|A2|U|3791
4UJE|1|A2|G|3792
4UJE|1|A2|A|3793
4UJE|1|A2|A|3794
4UJE|1|A2|C|3795
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain CA
- 60S RIBOSOMAL PROTEIN L8
- Chain Cn
- 60S RIBOSOMAL PROTEIN L41
- Chain Cp
- 60S RIBOSOMAL PROTEIN L37A
Coloring options: