J4_4UJE_011
3D structure
- PDB id
- 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.9 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 4UJE|1|AW|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UJE_011 not in the Motif Atlas
- Homologous match to J4_2CSX_001
- Geometric discrepancy: 0.5204
- The information below is about J4_2CSX_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4UJE|1|AW|A|7
4UJE|1|AW|U|8
4UJE|1|AW|A|9
4UJE|1|AW|G|10
*
4UJE|1|AW|C|25
4UJE|1|AW|A|26
4UJE|1|AW|G|27
*
4UJE|1|AW|C|43
4UJE|1|AW|G|44
4UJE|1|AW|U|45
4UJE|1|AW|G|46
4UJE|1|AW|U|47
4UJE|1|AW|C|48
4UJE|1|AW|C|49
*
4UJE|1|AW|G|65
4UJE|1|AW|U|66
Current chains
- Chain AW
- TRNA-PHE
Nearby chains
- Chain BF
- 40S RIBOSOMAL PROTEIN S5
- Chain BO
- 40S RIBOSOMAL PROTEIN S14
- Chain Co
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: