J4_4UY8_001

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4UY8|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4UY8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0919

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|C|268
4UY8|1|A|C|269
*
4UY8|1|A|G|370
4UY8|1|A|A|371
4UY8|1|A|G|372
4UY8|1|A|U|373
4UY8|1|A|A|374
4UY8|1|A|G|375
*
4UY8|1|A|U|399
4UY8|1|A|G|400
4UY8|1|A|A|401
4UY8|1|A|A|402
4UY8|1|A|U|403
4UY8|1|A|A|404
4UY8|1|A|U|405
4UY8|1|A|G|406
*
4UY8|1|A|C|421
4UY8|1|A|A|422
4UY8|1|A|A|423
4UY8|1|A|G|424

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN L9

Chain X

50S RIBOSOMAL PROTEIN L28