J4_4UY8_004

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4UY8|1|A|G|1271, 4UY8|1|A|A|1272, 4UY8|1|A|U|1273, 4UY8|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4UY8_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0634

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4UY8|1|A|C|1270
4UY8|1|A|G|1271
4UY8|1|A|A|1272
4UY8|1|A|U|1273
4UY8|1|A|A|1274
4UY8|1|A|A|1275
4UY8|1|A|A|1276
*
4UY8|1|A|U|1294
4UY8|1|A|C|1295
*
4UY8|1|A|G|1645
4UY8|1|A|C|1646
4UY8|1|A|U|1647
4UY8|1|A|U|1648
*
4UY8|1|A|A|2009
4UY8|1|A|G|2010

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain N

50S RIBOSOMAL PROTEIN L17

Chain S

50S RIBOSOMAL PROTEIN L22