J4_4UY8_009
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 4UY8|1|A|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4UY8_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1027
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4UY8|1|A|C|1833
4UY8|1|A|U|1834
4UY8|1|A|G|1835
*
4UY8|1|A|C|1905
4UY8|1|A|G|1906
*
4UY8|1|A|C|1924
4UY8|1|A|C|1925
4UY8|1|A|U|1926
4UY8|1|A|A|1927
4UY8|1|A|A|1928
4UY8|1|A|G|1929
4UY8|1|A|G|1930
4UY8|1|A|U|1931
4UY8|1|A|A|1932
4UY8|1|A|G|1933
*
4UY8|1|A|C|1967
4UY8|1|A|G|1968
4UY8|1|A|A|1969
4UY8|1|A|A|1970
4UY8|1|A|U|1971
4UY8|1|A|G|1972
Current chains
- Chain A
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain V
- Transfer RNA; tRNA
Coloring options: